Index

_

__init__() (odm_element.ODMElement method) (odmlib.dataset_json_1_1.DatasetJSON method) (odmlib.dataset_json_1_1.model.DatasetJSON method) _content (odmlib.arm_1_0.model.Code attribute) (odmlib.ct_1_1_1.model.CDISCDefinition attribute) (odmlib.ct_1_1_1.model.CDISCSubmissionValue attribute) (odmlib.ct_1_1_1.model.CDISCSynonym attribute) (odmlib.ct_1_1_1.model.PreferredTerm attribute) (odmlib.ct_1_1_1.model.ProtocolName attribute) (odmlib.ct_1_1_1.model.StudyDescription attribute) (odmlib.ct_1_1_1.model.StudyName attribute) (odmlib.ct_1_1_1.model.TranslatedText attribute)

A

actual_value (exceptions.OdmlibTypeError attribute) add_code_list() (builder.ODMBuilder method) add_column() (odmlib.dataset_json_1_1.DatasetJSON method) (odmlib.dataset_json_1_1.model.DatasetJSON method) add_condition_def() (builder.ODMBuilder method) add_error() (exceptions.ErrorCollector method) add_form_def() (builder.ODMBuilder method) add_form_ref() (builder.ODMBuilder method) add_item_def() (builder.ODMBuilder method) add_item_group_def() (builder.ODMBuilder method) add_item_group_ref() (builder.ODMBuilder method) add_item_ref() (builder.ODMBuilder method) add_measurement_unit() (builder.ODMBuilder method) add_metadata_version() (builder.ODMBuilder method) add_method_def() (builder.ODMBuilder method) add_oid() (oid_generator.DynamicOIDRef method) (oid_index.OIDIndex method) add_oid_ref() (oid_generator.DynamicOIDRef method) add_post_build_hook() (odmlib.dataset_json_1_1.define_builder.DefineBuilder method) add_row() (odmlib.dataset_json_1_1.DatasetJSON method) (odmlib.dataset_json_1_1.model.DatasetJSON method) add_study() (builder.ODMBuilder method) add_study_event_def() (builder.ODMBuilder method) add_study_event_ref() (builder.ODMBuilder method) add_warning() (exceptions.ErrorCollector method) Alias (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.CodeListItem attribute) (odmlib.arm_1_0.model.EnumeratedItem attribute) (odmlib.arm_1_0.model.ItemDef attribute) (odmlib.arm_1_0.model.ItemGroupDef attribute)

AnalysisDataset (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.AnalysisDatasets attribute), [1] AnalysisDatasets (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.AnalysisResult attribute), [1] AnalysisPurpose (odmlib.arm_1_0.model.AnalysisResult attribute), [1] AnalysisReason (odmlib.arm_1_0.model.AnalysisResult attribute), [1] AnalysisResult (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.ResultDisplay attribute), [1] AnalysisResultDisplays (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) AnalysisVariable (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.AnalysisDataset attribute), [1] AnnotatedCRF (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) ArchiveLocationID (odmlib.arm_1_0.model.ItemGroupDef attribute) arm_loader module AsOfDateTime (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1] attach() (builder.ODMBuilder method) attach_to_current() (builder.ODMBuilder method) attribute (exceptions.OdmlibTypeError attribute) (exceptions.OdmlibValidationError attribute)

B

bind_document_namespaces() (in module ns_registry) Borg (class in ns_registry) build() (builder.ODMBuilder method) (odmlib.dataset_json_1_1.define_builder.DefineBuilder method)

build_def_ref_mapping() (in module oid_generator) build_oid_index() (odm_element.ODMElement method) build_ref_def_mapping() (in module oid_generator) builder module

C

CDISCDefinition (class in odmlib.ct_1_1_1.model) (odmlib.ct_1_1_1.model.EnumeratedItem attribute), [1] CDISCSubmissionValue (class in odmlib.ct_1_1_1.model) (odmlib.ct_1_1_1.model.CodeList attribute), [1] CDISCSynonym (class in odmlib.ct_1_1_1.model) (odmlib.ct_1_1_1.model.CodeList attribute), [1] (odmlib.ct_1_1_1.model.EnumeratedItem attribute), [1] cerberus_errors (exceptions.OdmlibConformanceError attribute) check_oid_refs() (oid_generator.DynamicOIDRef method) check_unreferenced_oids() (oid_generator.DynamicOIDRef method) CheckValue (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.RangeCheck attribute) Class (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.ItemGroupDef attribute) clinical_data_to_dataframe() (in module odmlib.dataframe) ClinicalData (class in odmlib.dataset_1_0_1.model) (odmlib.dataset_1_0_1.model.ODM attribute), [1] Code (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.ProgrammingCode attribute), [1] CodedValue (odmlib.arm_1_0.model.CodeListItem attribute) (odmlib.arm_1_0.model.EnumeratedItem attribute) (odmlib.ct_1_1_1.model.EnumeratedItem attribute), [1] CodeList (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) (odmlib.ct_1_1_1.model.MetaDataVersion attribute), [1] CodeListExtensible (odmlib.ct_1_1_1.model.CodeList attribute), [1] CodeListItem (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.CodeList attribute) CodeListOID (odmlib.arm_1_0.model.CodeListRef attribute) CodeListRef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.ItemDef attribute) collecting() (exceptions.ErrorReporting method) Column (class in odmlib.dataset_json_1_1) (class in odmlib.dataset_json_1_1.model) column_names (odmlib.dataset_json_1_1.DatasetJSON property) (odmlib.dataset_json_1_1.model.DatasetJSON property) columns (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1]

CommentDef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) CommentOID (odmlib.arm_1_0.model.AnalysisDatasets attribute), [1] (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.ItemDef attribute) (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.MetaDataVersion attribute) (odmlib.arm_1_0.model.Standard attribute) (odmlib.arm_1_0.model.WhereClauseDef attribute) Comparator (odmlib.arm_1_0.model.RangeCheck attribute) context module Context (odmlib.arm_1_0.model.Alias attribute) (odmlib.arm_1_0.model.FormalExpression attribute) (odmlib.arm_1_0.model.ODM attribute) (odmlib.arm_1_0.model.ProgrammingCode attribute), [1] (odmlib.ct_1_1_1.model.Alias attribute), [1] create_document() (arm_loader.JSONArmLoader method) (arm_loader.XMLArmLoader method) (define_loader.JSONDefineLoader method) (define_loader.XMLDefineLoader method) (document_loader.DocumentLoader method) (odm_loader.JSONODMLoader method) (odm_loader.XMLODMLoader method) create_document_from_string() (arm_loader.JSONArmLoader method) (arm_loader.XMLArmLoader method) (define_loader.JSONDefineLoader method) (define_loader.XMLDefineLoader method) (document_loader.DocumentLoader method) (odm_loader.JSONODMLoader method) (odm_loader.XMLODMLoader method) create_odmlib() (loader.ODMLoader method) create_oid_checker() (in module oid_generator) CreationDateTime (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1] current (builder.ODMBuilder property)

D

dataframe_to_dataset_json() (in module odmlib.dataframe) dataframe_to_items() (in module odmlib.dataframe) dataset_json_to_dataframe() (in module odmlib.dataframe) dataset_json_to_dataset_xml() (in module odmlib.dataset_json_1_1) (in module odmlib.dataset_json_1_1.converter) DATASET_JSON_VERSION (odmlib.dataset_json_1_1.define_flattener.DefineFlattener attribute) (odmlib.dataset_json_1_1.DefineFlattener attribute) dataset_to_dataframe() (in module odmlib.dataframe) dataset_xml_to_dataset_json() (in module odmlib.dataset_json_1_1) (in module odmlib.dataset_json_1_1.converter) DatasetJSON (class in odmlib.dataset_json_1_1) (class in odmlib.dataset_json_1_1.model) datasetJSONCreationDateTime (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] DatasetJSONElement (class in odmlib.dataset_json_1_1.model) datasetJSONVersion (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] DatasetXMLVersion (odmlib.dataset_1_0_1.model.ODM attribute), [1] DataType (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.ItemDef attribute) (odmlib.ct_1_1_1.model.CodeList attribute), [1] dataType (odmlib.dataset_json_1_1.Column attribute), [1] (odmlib.dataset_json_1_1.model.Column attribute), [1] DateString (class in typed) DateTimeString (class in typed) dbLastModifiedDateTime (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] Decode (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.CodeListItem attribute) default_namespace (ns_registry.Borg attribute) define_2_0 module define_2_1 module define_loader module define_metadata_to_dataframes() (in module odmlib.dataframe) DefineBuilder (class in odmlib.dataset_json_1_1.define_builder) DefineContext (class in context) DefineFlattener (class in odmlib.dataset_json_1_1) (class in odmlib.dataset_json_1_1.define_flattener) DefineVersion (odmlib.arm_1_0.model.MetaDataVersion attribute) describe() (valueset.ValueSet class method) Description (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.AnalysisResult attribute), [1] (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.CodeListItem attribute) (odmlib.arm_1_0.model.CommentDef attribute) (odmlib.arm_1_0.model.Documentation attribute), [1] (odmlib.arm_1_0.model.EnumeratedItem attribute) (odmlib.arm_1_0.model.ItemDef attribute) (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.MetaDataVersion attribute) (odmlib.arm_1_0.model.MethodDef attribute) (odmlib.arm_1_0.model.Origin attribute) (odmlib.arm_1_0.model.ResultDisplay attribute), [1] (odmlib.arm_1_0.model.ValueListDef attribute) (odmlib.ct_1_1_1.model.CodeList attribute), [1] (odmlib.ct_1_1_1.model.MetaDataVersion attribute), [1] (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1]

descriptor module Descriptor (class in descriptor) Dictionary (class in typed) (odmlib.arm_1_0.model.ExternalCodeList attribute) DictODMLoader (class in odm_loader) discover_model_classes() (in module oid_generator) discover_oid_definitions() (in module oid_generator) discover_oid_references() (in module oid_generator) DisplayFormat (odmlib.arm_1_0.model.ItemDef attribute) displayFormat (odmlib.dataset_json_1_1.Column attribute), [1] (odmlib.dataset_json_1_1.model.Column attribute), [1] document_loader module Documentation (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.AnalysisResult attribute), [1] DocumentLoader (class in document_loader) DocumentRef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.AnnotatedCRF attribute) (odmlib.arm_1_0.model.CommentDef attribute) (odmlib.arm_1_0.model.Documentation attribute), [1] (odmlib.arm_1_0.model.MethodDef attribute) (odmlib.arm_1_0.model.Origin attribute) (odmlib.arm_1_0.model.ProgrammingCode attribute), [1] (odmlib.arm_1_0.model.ResultDisplay attribute), [1] (odmlib.arm_1_0.model.SupplementalDoc attribute) Domain (odmlib.arm_1_0.model.ItemGroupDef attribute) DurationDateTimeString (class in typed) DynamicOIDRef (class in oid_generator)

E

element_path (exceptions.OdmlibTypeError attribute) (exceptions.OdmlibValidationError attribute) element_type (exceptions.OdmlibValidationError attribute) Email (class in typed) EnumeratedItem (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.CodeList attribute) (odmlib.ct_1_1_1.model.CodeList attribute), [1] ErrorCollector (class in exceptions) ErrorReporting (class in exceptions) errors (exceptions.ErrorCollector attribute) exceptions module

expand() (exceptions.OdmlibConformanceError method) expected_type (exceptions.OdmlibTypeError attribute) ExtCodeID (odmlib.ct_1_1_1.model.CodeList attribute), [1] (odmlib.ct_1_1_1.model.EnumeratedItem attribute), [1] ExtendedValidValues (class in typed) ExtendedValue (odmlib.arm_1_0.model.CodeListItem attribute) (odmlib.arm_1_0.model.EnumeratedItem attribute) ExternalCodeList (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.CodeList attribute) EXTRA_TABLE_NAMES (odmlib.dataset_json_1_1.define_builder.DefineBuilder attribute) (odmlib.dataset_json_1_1.define_flattener.DefineFlattener attribute) (odmlib.dataset_json_1_1.DefineFlattener attribute)

F

field_path (exceptions.OdmlibConformanceError attribute) FileName (class in typed) FileOID (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1] fileOID (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] FileType (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1] find() (odm_element.ODMElement method) find_all() (odm_element.ODMElement method) (oid_index.OIDIndex method) find_by() (odm_element.ODMElement method) FirstPage (odmlib.arm_1_0.model.PDFPageRef attribute) flatten_aliases() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_all() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_cerberus_errors() (in module exceptions) flatten_codelist_terms() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_codelists() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_comments() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method)

flatten_datasets() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_documents() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_methods() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_origins() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_standards() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_study() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_value_level() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_variables() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) flatten_where_clauses() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) Float (class in typed) FormalExpression (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MethodDef attribute) from_dict() (odmlib.dataset_json_1_1.DatasetJSON class method) (odmlib.dataset_json_1_1.model.DatasetJSON class method) from_json() (odmlib.dataset_json_1_1.DatasetJSON class method) (odmlib.dataset_json_1_1.model.DatasetJSON class method)

G

get_document_namespaces() (in module ns_registry) get_mode() (in module odmlib.mode), [1] get_ns_attribute_name() (ns_registry.NamespaceRegistry method) get_ns_entry_dict() (ns_registry.NamespaceRegistry method) get_odm_namespace_entries() (ns_registry.NamespaceRegistry method) get_prefix_ns_from_uri() (ns_registry.NamespaceRegistry method) get_schema_dir() (in module schema_manager)

get_schema_path() (in module schema_manager) get_skip_config() (in module oid_generator_config) get_version_for_module() (valueset.ValueSetLoader class method) GlobalVariables (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.Study attribute) (odmlib.ct_1_1_1.model.Study attribute), [1] Granularity (odmlib.ct_1_1_1.model.ODM attribute), [1]

H

has_errors (exceptions.ErrorCollector property) HasNoData (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.ItemRef attribute)

hint (exceptions.OdmlibTypeError attribute) (exceptions.OdmlibValidationError attribute) href (odmlib.arm_1_0.model.ExternalCodeList attribute) (odmlib.arm_1_0.model.leaf attribute)

I

ID (class in typed) (odmlib.arm_1_0.model.leaf attribute) (odmlib.arm_1_0.model.ODM attribute) IDRef (class in typed) IncompleteDateString (class in typed) IncompleteDateTimeString (class in typed) IncompleteTimeString (class in typed) Integer (class in typed) is_collecting_checker() (in module exceptions) is_full (exceptions.ErrorCollector property) is_oids_verified() (oid_generator.DynamicOIDRef method) is_permissive() (in module odmlib.mode), [1] is_pristine_auto_created() (in module descriptor) IsNonStandard (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.ItemRef attribute) IsReferenceData (odmlib.arm_1_0.model.ItemGroupDef attribute) ItemData (class in odmlib.dataset_1_0_1.model) (odmlib.dataset_1_0_1.model.ItemGroupData attribute), [1] ItemDef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute)

ItemGroupData (class in odmlib.dataset_1_0_1.model) (odmlib.dataset_1_0_1.model.ClinicalData attribute), [1] (odmlib.dataset_1_0_1.model.ReferenceData attribute), [1] ItemGroupDataSeq (odmlib.dataset_1_0_1.model.ItemGroupData attribute), [1] ItemGroupDef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) ItemGroupOID (odmlib.arm_1_0.model.AnalysisDataset attribute), [1] (odmlib.dataset_1_0_1.model.ItemGroupData attribute), [1] itemGroupOID (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] ItemOID (odmlib.arm_1_0.model.AnalysisVariable attribute), [1] (odmlib.arm_1_0.model.ItemRef attribute) (odmlib.arm_1_0.model.RangeCheck attribute) (odmlib.dataset_1_0_1.model.ItemData attribute), [1] itemOID (odmlib.dataset_json_1_1.Column attribute), [1] (odmlib.dataset_json_1_1.model.Column attribute), [1] ItemRef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.ValueListDef attribute)

J

JSONArmLoader (class in arm_loader)

JSONDefineLoader (class in define_loader) JSONODMLoader (class in odm_loader)

K

KeySequence (odmlib.arm_1_0.model.ItemRef attribute)

keySequence (odmlib.dataset_json_1_1.Column attribute), [1] (odmlib.dataset_json_1_1.model.Column attribute), [1]

L

label (odmlib.dataset_json_1_1.Column attribute), [1] (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.Column attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] lang (odmlib.arm_1_0.model.TranslatedText attribute) (odmlib.ct_1_1_1.model.TranslatedText attribute), [1] LastPage (odmlib.arm_1_0.model.PDFPageRef attribute) leaf (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.MetaDataVersion attribute) leafID (odmlib.arm_1_0.model.DocumentRef attribute) Length (odmlib.arm_1_0.model.ItemDef attribute) length (odmlib.dataset_json_1_1.Column attribute), [1] (odmlib.dataset_json_1_1.model.Column attribute), [1] List (class in typed) load_document() (arm_loader.JSONArmLoader method) (arm_loader.XMLArmLoader method) (define_loader.JSONDefineLoader method) (define_loader.XMLDefineLoader method) (document_loader.DocumentLoader method) (odm_loader.JSONODMLoader method) (odm_loader.XMLODMLoader method) load_metadataversion() (arm_loader.JSONArmLoader method) (arm_loader.XMLArmLoader method) (define_loader.JSONDefineLoader method) (define_loader.XMLDefineLoader method) (document_loader.DocumentLoader method) (odm_loader.JSONODMLoader method) (odm_loader.XMLODMLoader method)

load_odm() (arm_loader.JSONArmLoader method) (arm_loader.XMLArmLoader method) (define_loader.JSONDefineLoader method) (define_loader.XMLDefineLoader method) (document_loader.DocumentLoader method) (odm_loader.JSONODMLoader method) (odm_loader.XMLODMLoader method) load_odm_string() (loader.ODMLoader method) load_study() (arm_loader.JSONArmLoader method) (arm_loader.XMLArmLoader method) (define_loader.JSONDefineLoader method) (define_loader.XMLDefineLoader method) (document_loader.DocumentLoader method) (odm_loader.JSONODMLoader method) (odm_loader.XMLODMLoader method) load_valuesets() (valueset.ValueSetLoader class method) loader module

M

Mandatory (odmlib.arm_1_0.model.ItemRef attribute) max_errors (exceptions.ErrorCollector attribute) metadata_to_dataframe() (in module odmlib.dataframe) metaDataRef (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] MetaDataVersion (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.Study attribute) (odmlib.ct_1_1_1.model.Study attribute), [1] MetaDataVersion() (loader.ODMLoader method) MetaDataVersionOID (odmlib.dataset_1_0_1.model.ClinicalData attribute), [1] (odmlib.dataset_1_0_1.model.ReferenceData attribute), [1] metaDataVersionOID (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] MethodDef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) MethodOID (odmlib.arm_1_0.model.ItemRef attribute) module arm_loader builder context define_2_0 define_2_1 define_loader descriptor document_loader exceptions loader ns_registry odm_1_3_2 odm_2_0 odm_element odm_loader odmlib.arm_1_0.model odmlib.ct_1_1_1.model odmlib.dataframe odmlib.dataset_1_0_1.model odmlib.dataset_json_1_1 odmlib.dataset_json_1_1.converter odmlib.dataset_json_1_1.define_builder odmlib.dataset_json_1_1.define_flattener odmlib.dataset_json_1_1.model odmlib.mode oid_generator oid_generator_config oid_index schema_manager typed valueset

N

Name (class in typed) (odmlib.arm_1_0.model.Alias attribute) (odmlib.arm_1_0.model.Class attribute) (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.ItemDef attribute) (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.MetaDataVersion attribute) (odmlib.arm_1_0.model.MethodDef attribute) (odmlib.arm_1_0.model.ResultDisplay attribute), [1] (odmlib.arm_1_0.model.Standard attribute) (odmlib.arm_1_0.model.SubClass attribute) (odmlib.ct_1_1_1.model.Alias attribute), [1] (odmlib.ct_1_1_1.model.CodeList attribute), [1] (odmlib.ct_1_1_1.model.MetaDataVersion attribute), [1] name (odmlib.dataset_json_1_1.Column attribute), [1] (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.Column attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.SourceSystem attribute), [1] (odmlib.dataset_json_1_1.SourceSystem attribute), [1] namespace (odm_element.ODMElement attribute) (odmlib.arm_1_0.model.Alias attribute) (odmlib.arm_1_0.model.AnalysisDataset attribute) (odmlib.arm_1_0.model.AnalysisDatasets attribute) (odmlib.arm_1_0.model.AnalysisResult attribute) (odmlib.arm_1_0.model.AnalysisResultDisplays attribute) (odmlib.arm_1_0.model.AnalysisVariable attribute) (odmlib.arm_1_0.model.AnnotatedCRF attribute) (odmlib.arm_1_0.model.CheckValue attribute) (odmlib.arm_1_0.model.Class attribute) (odmlib.arm_1_0.model.Code attribute) (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.CodeListItem attribute) (odmlib.arm_1_0.model.CodeListRef attribute) (odmlib.arm_1_0.model.CommentDef attribute) (odmlib.arm_1_0.model.Decode attribute) (odmlib.arm_1_0.model.Description attribute) (odmlib.arm_1_0.model.Documentation attribute) (odmlib.arm_1_0.model.DocumentRef attribute) (odmlib.arm_1_0.model.EnumeratedItem attribute) (odmlib.arm_1_0.model.ExternalCodeList attribute) (odmlib.arm_1_0.model.FormalExpression attribute) (odmlib.arm_1_0.model.GlobalVariables attribute) (odmlib.arm_1_0.model.ItemDef attribute) (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.ItemRef attribute) (odmlib.arm_1_0.model.leaf attribute) (odmlib.arm_1_0.model.MetaDataVersion attribute) (odmlib.arm_1_0.model.MethodDef attribute) (odmlib.arm_1_0.model.ODM attribute) (odmlib.arm_1_0.model.Origin attribute) (odmlib.arm_1_0.model.PDFPageRef attribute) (odmlib.arm_1_0.model.ProgrammingCode attribute) (odmlib.arm_1_0.model.ProtocolName attribute) (odmlib.arm_1_0.model.RangeCheck attribute) (odmlib.arm_1_0.model.ResultDisplay attribute) (odmlib.arm_1_0.model.Standard attribute) (odmlib.arm_1_0.model.Standards attribute) (odmlib.arm_1_0.model.Study attribute) (odmlib.arm_1_0.model.StudyDescription attribute) (odmlib.arm_1_0.model.StudyName attribute) (odmlib.arm_1_0.model.SubClass attribute) (odmlib.arm_1_0.model.SupplementalDoc attribute) (odmlib.arm_1_0.model.title attribute) (odmlib.arm_1_0.model.TranslatedText attribute) (odmlib.arm_1_0.model.ValueListDef attribute) (odmlib.arm_1_0.model.ValueListRef attribute) (odmlib.arm_1_0.model.WhereClauseDef attribute) (odmlib.arm_1_0.model.WhereClauseRef attribute) (odmlib.ct_1_1_1.model.Alias attribute) (odmlib.ct_1_1_1.model.CDISCDefinition attribute) (odmlib.ct_1_1_1.model.CDISCSubmissionValue attribute) (odmlib.ct_1_1_1.model.CDISCSynonym attribute) (odmlib.ct_1_1_1.model.CodeList attribute) (odmlib.ct_1_1_1.model.Description attribute) (odmlib.ct_1_1_1.model.EnumeratedItem attribute) (odmlib.ct_1_1_1.model.GlobalVariables attribute) (odmlib.ct_1_1_1.model.MetaDataVersion attribute) (odmlib.ct_1_1_1.model.ODM attribute) (odmlib.ct_1_1_1.model.PreferredTerm attribute) (odmlib.ct_1_1_1.model.ProtocolName attribute) (odmlib.ct_1_1_1.model.Study attribute) (odmlib.ct_1_1_1.model.StudyDescription attribute) (odmlib.ct_1_1_1.model.StudyName attribute) (odmlib.ct_1_1_1.model.TranslatedText attribute) (odmlib.dataset_1_0_1.model.ClinicalData attribute) (odmlib.dataset_1_0_1.model.ItemData attribute) (odmlib.dataset_1_0_1.model.ItemGroupData attribute) (odmlib.dataset_1_0_1.model.ODM attribute) (odmlib.dataset_1_0_1.model.ReferenceData attribute) (odmlib.dataset_json_1_1.Column attribute) (odmlib.dataset_json_1_1.DatasetJSON attribute) (odmlib.dataset_json_1_1.model.Column attribute) (odmlib.dataset_json_1_1.model.DatasetJSON attribute) (odmlib.dataset_json_1_1.model.DatasetJSONElement attribute) (odmlib.dataset_json_1_1.model.SourceSystem attribute) (odmlib.dataset_json_1_1.SourceSystem attribute)

NamespaceRegistry (class in ns_registry) namespaces (ns_registry.Borg attribute) NonNegative (class in typed) NonNegativeFloat (class in typed) NonNegativeInteger (class in typed) ns_registry module

O

ODM (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (class in odmlib.dataset_1_0_1.model) odm_1_3_2 module odm_2_0 module odm_element module odm_loader module odm_type (typed.Dictionary attribute) (typed.ID attribute) (typed.IDRef attribute) (typed.List attribute) (typed.Name attribute) (typed.OID attribute) (typed.OIDRef attribute) (typed.String attribute) (typed.Typed attribute), [1] ODMBuilder (class in builder) ODMContext (class in context) ODMElement (class in odm_element) odmlib.arm_1_0.model module odmlib.ct_1_1_1.model module odmlib.dataframe module odmlib.dataset_1_0_1.model module odmlib.dataset_json_1_1 module odmlib.dataset_json_1_1.converter module odmlib.dataset_json_1_1.define_builder module odmlib.dataset_json_1_1.define_flattener module odmlib.dataset_json_1_1.model module odmlib.mode module OdmlibConformanceError OdmlibDeprecationWarning OdmlibElementOrderError OdmlibError OdmlibErrorLimitError OdmlibInteroperabilityWarning OdmlibLoaderStateError OdmlibNamespaceError OdmlibOIDError

OdmlibParsingError OdmlibRequiredAttributeError OdmlibSchemaValidationError OdmlibSerializationError OdmlibTypeError OdmlibValidationError OdmlibWarning ODMListObject (class in typed) ODMLoader (class in loader) ODMMeta (class in odm_element) ODMObject (class in typed) ODMVersion (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1] ODMWriter (class in odm_element) OID (class in typed) (odmlib.arm_1_0.model.AnalysisResult attribute), [1] (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.CommentDef attribute) (odmlib.arm_1_0.model.ItemDef attribute) (odmlib.arm_1_0.model.ItemGroupDef attribute) (odmlib.arm_1_0.model.MetaDataVersion attribute) (odmlib.arm_1_0.model.MethodDef attribute) (odmlib.arm_1_0.model.ResultDisplay attribute), [1] (odmlib.arm_1_0.model.Standard attribute) (odmlib.arm_1_0.model.Study attribute) (odmlib.arm_1_0.model.ValueListDef attribute) (odmlib.arm_1_0.model.WhereClauseDef attribute) (odmlib.ct_1_1_1.model.CodeList attribute), [1] (odmlib.ct_1_1_1.model.MetaDataVersion attribute), [1] (odmlib.ct_1_1_1.model.Study attribute), [1] oid_generator module oid_generator_config module oid_index module OIDIndex (class in oid_index) OIDRef (class in typed) open_define() (in module context) open_odm() (in module context) open_odm_document() (loader.ODMLoader method) OrderNumber (odmlib.arm_1_0.model.CodeListItem attribute) (odmlib.arm_1_0.model.EnumeratedItem attribute) (odmlib.arm_1_0.model.ItemRef attribute) Origin (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.ItemDef attribute) Originator (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1] originator (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1]

P

PageRefs (odmlib.arm_1_0.model.PDFPageRef attribute) ParameterOID (odmlib.arm_1_0.model.AnalysisResult attribute), [1] ParentClass (odmlib.arm_1_0.model.SubClass attribute) PartialDateString (class in typed) PartialDateTimeString (class in typed) PartialTimeString (class in typed) PDFPageRef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.DocumentRef attribute) PERMISSIVE (odmlib.mode.ValidationMode attribute), [1] permissive() (in module odmlib.mode), [1] Positive (class in typed) PositiveFloat (class in typed)

PositiveInteger (class in typed) PreferredTerm (class in odmlib.ct_1_1_1.model) (odmlib.ct_1_1_1.model.CodeList attribute), [1] (odmlib.ct_1_1_1.model.EnumeratedItem attribute), [1] PriorFileOID (odmlib.dataset_1_0_1.model.ODM attribute), [1] ProgrammingCode (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.AnalysisResult attribute), [1] ProtocolName (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.GlobalVariables attribute) (odmlib.ct_1_1_1.model.GlobalVariables attribute), [1] PublishingSet (odmlib.arm_1_0.model.Standard attribute) Purpose (odmlib.arm_1_0.model.ItemGroupDef attribute)

R

raise_if_errors() (exceptions.ErrorCollector method) RangeCheck (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.WhereClauseDef attribute) Rank (odmlib.arm_1_0.model.CodeListItem attribute) (odmlib.arm_1_0.model.EnumeratedItem attribute) read_all() (odmlib.dataset_json_1_1.define_builder.DefineBuilder class method) read_json() (odmlib.dataset_json_1_1.DatasetJSON class method) (odmlib.dataset_json_1_1.model.DatasetJSON class method) read_ndjson() (odmlib.dataset_json_1_1.DatasetJSON class method) (odmlib.dataset_json_1_1.model.DatasetJSON class method) records (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] ref (odmlib.arm_1_0.model.ExternalCodeList attribute) ReferenceData (class in odmlib.dataset_1_0_1.model) (odmlib.dataset_1_0_1.model.ODM attribute), [1]

Regex (class in typed) remove_registry_entry() (ns_registry.NamespaceRegistry method) reorder_object() (odm_element.ODMElement method) Repeating (odmlib.arm_1_0.model.ItemGroupDef attribute) report() (exceptions.ErrorReporting method) reset() (ns_registry.Borg class method) (oid_generator.DynamicOIDRef method) resolve_model_class() (in module document_loader) ResultDisplay (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.AnalysisResultDisplays attribute), [1] Role (odmlib.arm_1_0.model.ItemRef attribute) RoleCodeListOID (odmlib.arm_1_0.model.ItemRef attribute) root() (loader.ODMLoader method) rows (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1]

S

SASDatasetName (odmlib.arm_1_0.model.ItemGroupDef attribute) SASFieldName (odmlib.arm_1_0.model.ItemDef attribute) SASFormat (class in typed) SASFormatName (odmlib.arm_1_0.model.CodeList attribute) SASName (class in typed) schema_manager module schemaLocation (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1] set_file() (builder.ODMBuilder method) set_mode() (in module odmlib.mode), [1] set_odm_namespace_attributes() (ns_registry.NamespaceRegistry method) set_odm_namespace_attributes_string() (ns_registry.NamespaceRegistry method) SignificantDigits (odmlib.arm_1_0.model.ItemDef attribute) Sized (class in typed) SizedRegexString (class in typed) SizedString (class in typed) SKIP_FORMAT (odmlib.mode.ValidationMode attribute), [1] SKIP_REQUIRED (odmlib.mode.ValidationMode attribute), [1] SKIP_TYPE (odmlib.mode.ValidationMode attribute), [1] SKIP_VALUESET (odmlib.mode.ValidationMode attribute), [1] snapshot() (ns_registry.NamespaceRegistry method) SoftHard (odmlib.arm_1_0.model.RangeCheck attribute) Source (odmlib.arm_1_0.model.Origin attribute) SourceSystem (class in odmlib.dataset_json_1_1) (class in odmlib.dataset_json_1_1.model) (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1] sourceSystem (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] SourceSystemVersion (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] (odmlib.dataset_1_0_1.model.ODM attribute), [1]

Standard (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.Standards attribute) StandardOID (odmlib.arm_1_0.model.CodeList attribute) (odmlib.arm_1_0.model.ItemGroupDef attribute) Standards (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) Status (odmlib.arm_1_0.model.Standard attribute) STRICT (odmlib.mode.ValidationMode attribute), [1] String (class in typed) Structure (odmlib.arm_1_0.model.ItemGroupDef attribute) Study (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.ODM attribute) (odmlib.ct_1_1_1.model.ODM attribute), [1] Study() (loader.ODMLoader method) StudyDescription (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.GlobalVariables attribute) (odmlib.ct_1_1_1.model.GlobalVariables attribute), [1] StudyName (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.GlobalVariables attribute) (odmlib.ct_1_1_1.model.GlobalVariables attribute), [1] StudyOID (odmlib.dataset_1_0_1.model.ClinicalData attribute), [1] (odmlib.dataset_1_0_1.model.ReferenceData attribute), [1] studyOID (odmlib.dataset_json_1_1.DatasetJSON attribute), [1] (odmlib.dataset_json_1_1.model.DatasetJSON attribute), [1] SubClass (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.Class attribute) SupplementalDoc (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) supports_error_collection (exceptions.ErrorReporting attribute)

T

TABLE_NAMES (odmlib.dataset_json_1_1.define_builder.DefineBuilder attribute) (odmlib.dataset_json_1_1.define_flattener.DefineFlattener attribute) (odmlib.dataset_json_1_1.DefineFlattener attribute) targetDataType (odmlib.dataset_json_1_1.Column attribute), [1] (odmlib.dataset_json_1_1.model.Column attribute), [1] title (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.leaf attribute) Title (odmlib.arm_1_0.model.PDFPageRef attribute) to_dict() (odm_element.ODMElement method) (odmlib.dataset_json_1_1.DatasetJSON method) (odmlib.dataset_json_1_1.model.DatasetJSON method) (odmlib.dataset_json_1_1.model.DatasetJSONElement method) to_element() (odm_element.ODMElement method) (odmlib.dataset_json_1_1.model.DatasetJSONElement method) to_json() (odm_element.ODMElement method) (odmlib.dataset_json_1_1.DatasetJSON method) (odmlib.dataset_json_1_1.model.DatasetJSON method)

to_xml() (odm_element.ODMElement method) (odmlib.dataset_json_1_1.model.DatasetJSONElement method) to_xml_string() (odm_element.ODMElement method) (odmlib.dataset_json_1_1.model.DatasetJSONElement method) TranslatedText (class in odmlib.arm_1_0.model) (class in odmlib.ct_1_1_1.model) (odmlib.arm_1_0.model.Decode attribute) (odmlib.arm_1_0.model.Description attribute) (odmlib.ct_1_1_1.model.Description attribute), [1] truncated (exceptions.ErrorCollector attribute) Type (odmlib.arm_1_0.model.MethodDef attribute) (odmlib.arm_1_0.model.Origin attribute) (odmlib.arm_1_0.model.PDFPageRef attribute) (odmlib.arm_1_0.model.Standard attribute) typed module Typed (class in typed)

U

UNKNOWN_ATTRIBUTE (valueset.ValueSet attribute)

unreferenced_oids() (odm_element.ODMElement method) Url (class in typed)

V

validate() (odm_element.ODMElement method) (valueset.ValueSet class method) ValidationMode (class in odmlib.mode), [1] ValidValues (class in typed) Value (odmlib.dataset_1_0_1.model.ItemData attribute), [1] value_set() (valueset.ValueSet class method) ValueListDef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) ValueListOID (odmlib.arm_1_0.model.ValueListRef attribute) ValueListRef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.ItemDef attribute)

valueset module ValueSet (class in valueset) ValueSetLoader (class in valueset) ValueSetString (class in typed) verify_conformance() (odm_element.ODMElement method) verify_oids() (odm_element.ODMElement method) verify_order() (odm_element.ODMElement method) Version (odmlib.arm_1_0.model.ExternalCodeList attribute) (odmlib.arm_1_0.model.Standard attribute) version (odmlib.dataset_json_1_1.model.SourceSystem attribute), [1] (odmlib.dataset_json_1_1.SourceSystem attribute), [1]

W

warnings (exceptions.ErrorCollector attribute) WhereClauseDef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.MetaDataVersion attribute) WhereClauseOID (odmlib.arm_1_0.model.WhereClauseRef attribute) WhereClauseRef (class in odmlib.arm_1_0.model) (odmlib.arm_1_0.model.AnalysisDataset attribute), [1] (odmlib.arm_1_0.model.ItemRef attribute) with_alias() (builder.ODMBuilder method) with_codelist_ref() (builder.ODMBuilder method) with_description() (builder.ODMBuilder method) with_measurement_unit_ref() (builder.ODMBuilder method)

with_question() (builder.ODMBuilder method) with_range_check() (builder.ODMBuilder method) write_all() (odmlib.dataset_json_1_1.define_flattener.DefineFlattener method) (odmlib.dataset_json_1_1.DefineFlattener method) write_json() (odm_element.ODMElement method) (odmlib.dataset_json_1_1.DatasetJSON method) (odmlib.dataset_json_1_1.model.DatasetJSON method) write_ndjson() (odmlib.dataset_json_1_1.DatasetJSON method) (odmlib.dataset_json_1_1.model.DatasetJSON method) write_odm() (odm_element.ODMWriter static method) write_xml() (odm_element.ODMElement method) (odmlib.dataset_json_1_1.model.DatasetJSONElement method)

X

XMLArmLoader (class in arm_loader)

XMLDefineLoader (class in define_loader) XMLODMLoader (class in odm_loader)